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Immunoinformatics

Curriculum vitae

Sujatha Mohan, M.Phil., Ph.D
Date of Birth: January 7, 1969

Unit Leader
Research Unit for Immunoinformatics
RIKEN Research Center for Allergy and Immunology (RCAI)
e-mail: sujatha@rcai.riken.jp

Education

1989-1991 Obtained Post graduation degree in Biological Sciences from University of Madras, India
1991-1992 Obtained Master of Philosophy degree in Biological Sciences from University of Madras, India
1999 Obtained Ph.D degree in Biological Sciences from University of Madras, India

Professional Experience

2007-Present Unit Leader, Research unit for Immunoinformatics, RIKEN Research Center for Allergy and
Immunology, Yokohama Institute, Japan
2008-Present Ph.D. Guide, Manipal Academy of Higher Education (MAHE), Karnataka, India
2006-Present Ph.D. Guide, Kuvempu University, India.
2005- 2007 Director, Institute of Bioinformatics, Bangalore, India.
2003-2005 Faculty Scientist, Institute of Bioinformatics, Bangalore, India.
2002-2003 Visiting Faculty, Bioinformatics and Biotechnology Department, SRM University, Chennai, India.
2001-2002 Head, Department of Bioinformatics, Sathyabama University, Chennai, India.
1998-2001 Head, Research and Development, Food Industry, Chennai, India.

Honors, Memberships and Other Experiences

2012-Present Reviewer, "Applied Biochemistry and Biotechnology"
2011-Present Editorial Board Member of “The Scientific World Journal”
2011-Present Senior member, Asia-Pacific Chemical, Biological& Environmental Engineering
Society (APCBEES)
2011-Present Reviewer, “BMC Bioinformatics”
2011-Present Reviewer, “Journal of Proteomics”
2011-Present Reviewer, “International Journal of Bioinformatics Research and Applications”
2011-Present Reviewer, "Nucleic Acids Research", Oxford University Press
2011-Present Reviewer, "Cell Biochemistry and Biophysics", Springer publication
2011-Present Reviewer, "In Silico Biology" - An International Journal on Computational Molecular Biology
2010-Present Reviewer, Springer journal, “Interdisciplinary Sciences: Computational Life Sciences”
2009-Present Reviewer, Elsevier journal, “Vaccine”
2010-Present Reviewer, Springer journal, “Interdisciplinary Sciences: Computational Life Sciences”
2003-2005 Editor, Online Newsletter “Bioinformatica”, Bioinformatics Society of India (INBIOS)
2002-2003 Faculty refreshment program, Bioinformatics,
Molecular Biosciences Pvt. Ltd., Chennai,India
1993-1996 Research Scholarship, Ministry of Environment and Forest, Government of India
1989-1991 University Rank holder, Masters in Science, University of Madras, Chennai, India

Publications (selected ones in chronological order)

1. Telikicherla, D.; Marimuthu, A.; Kashyap, M. K.; Ramachandra, Y. L.; Mohan, S.; Roa, J. C.; Maharudraiah, J.; Pandey, A. 2012. Overexpression of ribosome binding protein 1 (RRBP1) in breast cancer. Clinical Proteomics, 9(1), 7.

2. Goel, R., Raju, R., Maharudraiah, J., Kumar, G. S. S., Ghosh, K., Kumar, A., Lashmi, P. T., Sharma, J., Sharma, R., Balakrishnan, L., Pan, A., Kandasamy, K., Christopher, R., Krishna, V., Mohan, S. S., Harsha, H. C., Mathur, P. P., Pandey, A. and Prasad, T. S. K. 2011. A signaling network of thyroid- stimulating hormone. J Proteomics Bioinform. 4(10): 238-241. doi:10.4172/jpb.1000195.

3. Deepthi Telikicherla, Aditi Ambekar, Shyam MOHAN Palapetta, Sutopa B Dwivedi, Rajesh Raju, Jyoti Sharma, T.S. Kehsava Prasad, Y L Ramachandra, S Sujatha Mohan, Jagadeesha Maharudraiah, Srabani Mukherjee and Akhilesh Pandey. 2011. A comprehensive curated resource for Follicle Stimulating Hormone signaling. BMC Research Notes 2011, 4: 408

4. Raju, R., Nanjappa, V., Balakrishnan, L., Radhakrishnan, A., Thomas, J. K., Sharma, J., Tian, M., Palapetta, S. M., Subbannayya, T., Sekhar, N. R., Muthusamy, B., Goel, R., Subbannayya, Y., Telikicherla, D., Bhattacharjee, M., Pinto, S., Syed, S., Srinivas, S. M., Sathe, G. J., Ahmad, S., Chavan, S. N., Kumar, G. S. S., Marimuthu, A., Prasad, T. S. K., Harsha, H. C., Rahiman, B. A., Ohara, O., Bader, G. D., Mohan, S. S., Schiemann, W. P. and Pandey, A. 2011. Netslim: High-confidence curated signaling maps. Database (Oxford). bar032.

5. Raju, R., Balakrishnan, L., Nanjappa, V., Bhattacharjee, M., Getnet, D., Muthusamy, B., Thomas, J. K., Sharma, J., Rahiman, B. A., Harsha, H. C., Shankar, S., Prasad, T. S. K., Mohan, S. S., Bader, G. D., Wani, M. R. and Pandey, A. 2011. A comprehensive manually curated reaction map of RANKL/RANK signaling pathway. Database (Oxford). bar021.

6. Suresh Kumar Ramadoss and Sujatha Mohan. 2011. In Silico Identification of Prioritized Interacting Domains in Primary Immunodeficiency Disease Causing Genes. International Journal of Bioscience, Biochemistry and Bioinformatics, 1(2): 84-88.

7. Hiroshi Masuya, Yuko Makita, Norio Kobayashi, Koro Nishikata, Yuko Yoshida, Yoshiki Mochizuki, Koji Doi,Terue Takatsuki, Kazunori Waki, Nobuhiko Tanaka, Manabu Ishii, Akihiro Matsushima, Satoshi Takahashi, Atsushi Hijikata, Kouji Kozaki, Teiichi Furuichi, Hideya Kawaji, Shigeharu Wakana, Yukio Nakamura, Atsushi Yoshiki, Takehide Murata, Kaoru Fukami-Kobayashi, Sujatha Mohan, Osamu Ohara, Yoshihide Hayashizaki, Riichiro Mizoguchi, Yuichi Obata and Tetsuro Toyoda. 2011. The RIKEN integrated database of mammals. Nucleic Acids Research 39 (Database issue) : D861-70.

8. Atsushi Hijikata, Rajesh Raju, Shivakumar Keerthikumar, Subhashri Ramabadran, Lavanya Balakrishnan, Suresh Kumar Ramadoss, Akhilesh Pandey, Sujatha Mohan, and Osamu Ohara, 2010. Mutation@A Glance: an integrative web application for analyzing mutations from human genetic diseases. DNA Research, 17(3):197-208.

9. Kandasamy, K.*, Mohan, S.S*, Raju, R., Keerthikumar, S. et al. 2010. NetPath: A Public resource of Curated Signal Transduction Pathways. Genome Biology, 11(1):R3. *These authors contributed equally.

10. Kandasamy, K., Keerthikumar, S., Rajesh, R., Keshava Prasad, T. S., Ramachandra, Y. L., Mohan, S. and Pandey, A. 2009. PathBuilder – Open Source Software for Annotating and Developing Pathway Resources. Bioinformatics, 25(21):2860-2.

11. Shivakumar Keerthikumar, Sahely Bhadra, Kumaran Kandasamy, Rajesh Raju, Ramachandra Y.L, Chiranjib Bhattacharyya, Osamu Ohara, Sujatha Mohan and Akhilesh Pandey. 2009. Prediction of candidate primary immunodeficiency disease genes using a support vector machine learning approach. DNA Research, 16(6):345-51.

12. Shivakumar Keerthikumar, Rajesh Raju, Kumaran Kandaswamy, Atsushi Hijikata,Subhashri Ramabadran, Lavanya Balakrishnan, Mukhtar Ahmed, Sandhya Rani, Lakshmi Dhevi N Selvan, Devi S Somanathan, Somak Ray, Mitali Bhattacharjee, Sashikanth Gollapudi, Ramachandra Y.L, Sahely Bhadra, Chiranjib Bhattacharyya, Kohsuke Imai,Shigeaki Nonoyama, Hirokazu Kanegane, Toshio Miyawaki, Akhilesh Pandey, Osamu Ohara and S. Sujatha Mohan. 2009. RAPID: Resource of Asian Primary Immunodeficiency diseases. Nucleic Acids Research, 37 (Database issue):D863-7.

13. Prasad, T. S. K., Goel, R., Kandasamy, K., Keerthikumar, S., Kumar, S., Mathivanan, S., Telikicherla, D., Raju, R., Shafreen, B., Venugopal, A., Balakrishnan, L., Marimuthu, A., Banerjee, S., Somanathan, D. S., Sebastian, A., Rani, S., Ray, S., Kishore, C. J. H., Kanth, S., Ahmed, M., Kashyap, M., Mohmood, R., Ramachandra, Y. L., Krishna, V., Rahiman, A. B., Mohan, S., Ranganathan, P., Ramabadran, S., Chaerkady, R. and Pandey, A. Human Protein Reference Database - 2009 update. 2009. Nucleic Acids Research, 37 (Database issue):D767-72.

14. Mathivanan S, Ahmed M, Ahn NG, Alexandre H et al. 2008. Human Proteinpedia enables sharing of human protein data. 2008. Nature Biotechnology, 26(2): 164-7.

15. T K B Gandhi, Jun Zhong, Suresh Mathivanan, L Karthick, K N Chandrika, S. Sujatha Mohan, Salil Sharma, Stefan Pinkert, Shilpa Nagaraju, Balamurugan Periaswamy, Goparani Mishra, Kannabiran Nandakumar, Beiyi Shen, Nandan Deshpande, Rashmi Nayak, Malabika Sarker, Jef D Boeke, Giovanni Parmigiani, Jörg Schultz, Joel S Bader, & Akhilesh Pandey. Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets. 2006. Nature Genetics, 38: 285-293.

16. Suresh S, S. Sujatha Mohan, Mishra G, Hanumanthu GR, Suresh M, Reddy R, Pandey A. Proteomic resources: Integrating biomedical information in humans. Gene, 2005; 364: 13-18.

17. Muthusamy B, Hanumanthu G, Suresh S, Rekha B, Srinivas D, Karthick L, Vrushabendra BM, Sharma S, Mishra G, Chatterjee P, Mangala KS, Shivashankar HN, Chandrika KN, Deshpande N, Suresh M, Kannabiran N, Niranjan V, Nalli A, Keshava Prasad TS, Arun KS, Reddy R, Chandran S, Jadhav T, Julie D, Mahesh M, John SL, Palvankar K, Sudhir D, Bala P, Rashmi NS, Vishnupriya G, Dhar K, Reshma S, Chaerkady R, Gandhi TK, Harsha HC, S. Sujatha Mohan, Deshpande KS, Sarker M, Pandey A. Plasma proteome database as a resource for proteomics research. Proteomics, 2005; 5: 3531-3536.

18. H. C. Harsha, Shubha Suresh , Ramars Amanchy , Nandan Deshpande , K. Shanker, A. J. Yatish, Babylakshmi Muthusamy, B. M. Vrushabendra, B. P. Rashmi, K. N. Chandrika, N. Padma, Salil Sharma, Jose L. Badano, M. A. Ramya, H. N. Shivashankar, Suraj Peri, Dipanwita Roy Choudhury, M. P. Kavitha, R. Saravana, Vidya Niranjan, T. K. B. Gandhi, Neelanjana Ghosh, Sreenath Chandran, Minal Menezes, Mary Joy,S. Sujatha Mohan, Nicholas Katsanis, Krishna S. Deshpande, Chaerkady Raghothama, C. K. Prasad, and Akhilesh Pandey. Manually Curated Functional Annotation of the Human X Chromosome. Nature Genetics, 2005; 37: 331 – 332.